P.C. Blainey, A.M. van Oijen, A. Banerjee, G.L. Verdine, X.S. Xie
A base-excision DNA-repair protein searches for intrahelical lesions by fast sliding along DNA
Proc. Natl. Acad. Sci. USA, 103 (2006), 5752-7

J.B. Lee, R.K. Hite, S.M. Hamdan, X.S. Xie, C.C. Richardson, A.M. van Oijen
DNA primase acts as a molecular brake in DNA replication
Nature, 439 (2006) 621-4 (pdf)
(Discussed in: Prime-time progress, Stephen D. Bell, Nature 439 (2006) 542-3 (pdf)
The double helix unzipped, Arianne Heinrichs, Nature Reviews Molecular Cell Biology 7 (2006) 158-9 (pdf)
Tortoise puts brake on hare, Journal of Cell Biology 172 (2006) 640 (pdf)
DNA copier component found to be real drag, Courtney Humphries, Focus (Harvard Medical School), Feb 24 2006 (link))

Brian P. English, Wei Min, Antoine M. van Oijen, Kang Taek Lee, Guobin Luo, Hongye Sun, Binny J Cherayil, S.C. Kou, X. Sunney Xie
Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited
Nature Chemical Biology, 2 (2006) 87-94 (pdf)
(Discussed in: Michaelis-Menten is dead, long live Michaelis-Menten!, Nils G. Walter, Nature Chem. Biol. 2 (2006) 66-7 (pdf)
Michaelis-Menten for single molecule, Allison Doerr, Nature Methods 3 (2006) 158 (pdf)

Marcelo Ehrlich, Werner Boll, Antoine van Oijen, Ramesh Hariharan, Kartik Chandran, Max L. Nibert, Tomas Kirchhausen
Endocytosis by Random Initiation and Stabilization of Clathrin-Coated Pits
Cell, 118 (2004) 591-605 (pdf)
(Discussed in: Light on Pits, Elizabeth Smythe, Nature 431 (2003) 641-642) (pdf)

A.M. van Oijen, P.C. Blainey, D.J. Crampton, C.C. Richardson, T. Ellenberger, X.S. Xie
Single-molecule kinetics reveal base dependence and dynamic disorder of lambda exonuclease
Science, 301 (2003) 1235-1238 (pdf)
(Discussed in: Breakthrough of the year: The Runners-up, News and Editorial Staff, Science 302 (2003) 2039-2045) (pdf)

R. Verberk, A.M.van Oijen, M. Orrit
A simple model for the power-law blinking of single semiconductor nanocrystals
Phys. Rev. B, 66 (2002) 233202/1-233202/4 (pdf)

A.M. van Oijen, R. Verberk, Y. Durand, J. Schmidt, J.N.J. van Lingen, A.A. Bol, A. Meijerink
Continuous-wave two-photon excitation of individual CdS nanocrystallites
Appl. Phys. Lett., 79 (2001) 830-832

M. Matsushita, M. Ketelaars, A.M. van Oijen, J. Köhler, T.J. Aartsma, J.Schmidt
Spectroscopy on the B850 band of individual light-harvesting 2 complexes of Rhodopseudomonas acidophila; II. Exciton states of an elliptically deformed ring aggregate
Biophys. Jrnl., 80 (2001) 1604-1614

M. Ketelaars, A.M. van Oijen, M. Matsushita, J. Köhler, J. Schmidt, T.J. Aartsma
Spectroscopy on the B850 band of individual light-harvesting 2 complexes of Rhodopseudomonas acidophila; I. Experiments and Monte-Carlo simulations
Biophys. Jrnl., 80 (2001) 1591-1603

Y. Durand, A. Bloeß, A.M. van Oijen, E.J.J. Groenen, J. Schmidt
Pentacene: a suitable molecule to investigate the Sphol’skii effect at a molecular level?
Chem. Phys. Lett., 317 (2000) 232-237

A.M. van Oijen, M. Ketelaars, J. Köhler, T.J. Aartsma, J. Schmidt
Spectroscopy of individual LH2 complexes of Rhodopseudomonas acidophila: diagonal disorder, sample heterogeneity, spectral diffusion and energy transfer in the B 800 band
Biophys. Jrnl., 78 (2000) 1570-1577

A.M. van Oijen, M. Ketelaars, J. Köhler, T.J. Aartsma, J. Schmidt
Spectroscopy of individual LH2 complexes of Rhodopseudomonas acidophila: Localized excitations in the B800 band
Chem. Phys. 247 (1999) 53-60

A.M. van Oijen, M. Ketelaars, J. Köhler, T.J. Aartsma, J. Schmidt
Unraveling the electronic structure of individual photosynthetic pigment-protein complexes
Science 285 (1999) 400-402
(Discussed in: Coherent excitation in the antennacomplex, Michel Orrit, Science 285 (1999) 5426, and Electronic structure of light-harvesting complex unraveled, Chemical & Engineering News, July 19, 1999)

A.C.J. Brouwer, J. Köhler, A.M. van Oijen, E.J.J. Groenen, J. Schmidt
Single-molecule fluorescence autocorrelation experiments on pentacene. The dependence of intersystem crossing on isotopic composition
J. Chem. Phys. 110 (1999) 9151-9159

A.M. van Oijen, J. Köhler, J. Schmidt, M. Müller, G.J. Brakenhoff
Far-field fluorescence microscopy beyond the diffraction limit
J. Opt. Soc. Am. A 16 (1999) 909-915

A.M. van Oijen, M. Ketelaars, J. Köhler, T.J. Aartsma, J. Schmidt
Spectroscopy of Single Light-Harvesting Complexes from Purple Photosynthetic Bacteria at 1.2 K
J. Phys. Chem. B 102 (1998) 9363-9366

A.M. van Oijen, J. Köhler, J. Schmidt, M. Müller, G.J. Brakenhoff
3-Dimensional super-resolution by spectrally selective imaging
Chem. Phys. Lett. 292 (1998) 183-187
(Discussed in: Molecular Imaging Beats Limits of Light, Rob van den Berg, Science 281 (1998) 629)


Reviews / book chapters:

A.M. van Oijen, M. Ketelaars
Een nieuwe kijk op fotosynthese
Nederlands Tijdschrift voor Natuurkunde, 66 (2000) 38-41

A.M. van Oijen, M. Ketelaars, J. Köhler, T.J. Aartsma, J. Schmidt
The electronic structure of single photosynthetic pigment-protein complexes
Springer Series in Chemical Physics, 67 (2001) 62-81 J. Köhler,

A.M. van Oijen, M. Ketelaars, C. Hofmann, M. Matsushita, T.J. Aartsma, J. Schmidt
Optical spectroscopy of individual photosynthetic pigment protein complexes
International Journal of Modern Physics B, 15 (2001) 3633-3636

J. Wrachtrup, T.J. Aartsma, J. Köhler, M. Ketelaars, A.M. van Oijen, M. Matsushita, J. Schmidt, C. Tietz, F. Jelezko
Fluorescence-excitation spectroscopy on individual light-harvesting 2 complexes of Rhodopseudomonas acidophila
Single-Molecule Detection in Solution; Methods and Applications (Eds. Ch. Zander, J. Enderlein, R.A. Keller, R.R. Keller; published 2002 by John Wiley & Sons)